You could use the pstalker module of the PaiMei console GUI and select "functions only". Another way of doing so is to write a simple script to enumerate all the function in say IDA and export them in the file format that OllyDbg Breakpoint Manager uses (the file format is simple). Then you could attach to your target and import the breakpoints.
yea, not to parrot here, but it sounds like something custom is needed. walking through the export table of each dll is pretty easily scripted in most debuggers, even windbg ;-)
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